turning the high spots on the necks is usually good for taking out .001-.002" runout with no other modifications.
also, a seater die with a sliding sleeve that holds the case in concentricity with the seater plug also makes a difference.
I had the gunsmith take my redding competition 6.5x55 die sleeve and run the Improved reamer in it to make the internal dimension of the sleeve a perfect match to the fired 6.5x55AI case dimensions, and have runout of .001" max.
you can win a match with a few .001"s runout, but after that you better be happy with something other than first place. As distance increases, your runout will come back to bite you.
Bottom line, there are many many tricks to try with respect to your dies and your brass and your tools etc. This is the time consuming part of handloading that actually forces you to learn about every detail and every aspect of your equipment.