i only use my powder thrower on the progressive for making plinking loads.
when i'm making hunting ammo, setting up a ladder, or ammo that i load with stick powder i put a generic lee powder through die in there, toss a funnel on top, and let the chargemaster do its thing. then i manually dump the charge in as needed, cycle the press, leaving the ram in the upward position waiting for the next charge.
it still allows me to run mostly progressive, and take advantage of my case feeder, but it also lets me get the more precise weights i want/expect for those types of loads.